EC 4.1.2.4: deoxyribose-phosphate aldolase
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CatLog read 44 records for EC 4.1.2.4 from 3 papers, for 2 organisms. Names in these papers: 2-deoxyribose-5-phosphate aldolase (DERA), 2-deoxyribose-5-phosphate aldolase BH1352 (DERA).
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units.
CatLog also holds 39 records for EC 4.1.2.4 that are not yet re-read: from its earlier version, built from the enzyme databases and partly checked against the papers. All records for EC 4.1.2.4 in Browse.
Papers
| Paper | Organisms | Records |
|---|---|---|
| Linking coupled motions and entropic effects to the catalytic activity of 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | 21 |
| Structure-based mutagenesis approaches toward expanding the substrate specificity of D-2-deoxyribose-5-phosphate aldolase | Escherichia coli | 12 |
| Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol | Bacillus halodurans | 11 |
Records
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Paper | Open record |
|---|---|---|---|---|---|---|---|---|
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | d-2-deoxyribose | 0.107 | 57 | 0.002 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | d-2-deoxyribose-5-phosphate | 68 | 0.64 | 106 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 15 | 0.096 | 130 | pH 8, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 9.3 | 0.043 | 220 | pH 7, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 11 | 0.061 | 170 | pH 8, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 12 | 0.11 | 120 | pH 9, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 8 | — | 53 | pH 8, 15 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 9.3 | — | 76 | pH 8, 20 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 14 | — | 88 | pH 8, 25 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 20 | — | 300 | pH 8, 38 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA) | Escherichia coli | D-2-deoxyribose-5-phosphate | 26 | — | 480 | pH 8, 45 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA), D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant G205E | Escherichia coli | d-2-deoxyribose | — | — | 4 × 10⁻⁹ | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant G205E, d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant G205E | Escherichia coli | d-2-deoxyribose-5-phosphate | — | — | 1.3 × 10⁻⁶ | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant G205E, d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant K172E | Escherichia coli | d-2-deoxyribose | 0.022 | 63 | 3 × 10⁻⁴ | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant K172E, d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant K172E | Escherichia coli | d-2-deoxyribose-5-phosphate | — | — | 0.0013 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant K172E, d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant R207E | Escherichia coli | d-2-deoxyribose | 0.064 | 33 | 0.0019 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant R207E, d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant R207E | Escherichia coli | d-2-deoxyribose-5-phosphate | — | — | 9 × 10⁻⁴ | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant R207E, d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S238D | Escherichia coli | d-2-deoxyribose | 0.21 | 39 | 0.005 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S238D, d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S238D | Escherichia coli | d-2-deoxyribose-5-phosphate | 0.58 | 61 | 0.01 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S238D, d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S238I/S239I | Escherichia coli | D-2-deoxyribose-5-phosphate | 1.4 | 9.6 | 0.15 | pH 8, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S238I/S239I, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S238I/S239I | Escherichia coli | D-2-deoxyribose-5-phosphate | 1.8 | 7.6 | 0.23 | pH 7, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S238I/S239I, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S238I/S239I | Escherichia coli | D-2-deoxyribose-5-phosphate | 1.1 | 10 | 0.11 | pH 9, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S238I/S239I, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239E | Escherichia coli | d-2-deoxyribose | 0.175 | 67 | 0.0026 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239E, d-2-deoxyribose |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239E | Escherichia coli | d-2-deoxyribose-5-phosphate | 41 | 4.3 | 9.5 | pH 7.5, 25 °C | PMID 12467706 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239E, d-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 11 | 3 | 3.6 | pH 8, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 8.3 | 2.4 | 3.4 | pH 7, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 11 | 3.5 | 2.9 | pH 8, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 9.2 | 3.4 | 2.7 | pH 9, 30 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 5.7 | — | 1.8 | pH 8, 15 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 8.6 | — | 1.8 | pH 8, 20 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 12 | — | 2.6 | pH 8, 25 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 14 | — | 5.5 | pH 8, 38 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase (DERA)variant S239P | Escherichia coli | D-2-deoxyribose-5-phosphate | 15 | — | 7.8 | pH 8, 45 °C | PMID 29910900 | Open record: 2-deoxyribose-5-phosphate aldolase (DERA) variant S239P, D-2-deoxyribose-5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 13.3 | 0.22 | 60.4 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA), 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160H | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 12.8 | 0.45 | 28.5 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160H, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160K | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 3.5 | 0.06 | 58.8 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160K, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160M | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 8.8 | 0.17 | 51.7 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160M, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160W | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 7.5 | 0.22 | 33.9 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160W, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160Y | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 18.6 | 0.5 | 37.2 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160Y, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant F160Y/M173I | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 10.9 | 0.25 | 43.5 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant F160Y/M173I, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant I170V | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 14.9 | 0.18 | 82.5 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant I170V, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant M173I | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 11.7 | 0.17 | 68.9 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant M173I, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant M173L | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 12.8 | 0.21 | 60.8 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant M173L, 2-deoxy-D-ribose 5-phosphate |
| 2-deoxyribose-5-phosphate aldolase BH1352 (DERA)variant M173V | Bacillus halodurans | 2-deoxy-D-ribose 5-phosphate | 9.9 | 0.18 | 54.9 | pH 8.5, 30 °C | PMID 31806708 | Open record: 2-deoxyribose-5-phosphate aldolase BH1352 (DERA) variant M173V, 2-deoxy-D-ribose 5-phosphate |