Values CatLog read from this paper
A phylogenomic analysis of the shikimate dehydrogenases reveals broadscale functional diversification and identifies one functionally distinct subclass
PMID 18669580doi:10.1093/molbev/msn170Open in Browse
The paper itself is not on this site: read it at the publisher. This page lists only the values CatLog read from it.
CatLog read 14 records (42 values) from this paper: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu), YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460) from Pseudomonas putida.
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units. Values are in CatLog's units; each record opens in Browse with the line the paper prints and the checks.
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Open record |
|---|---|---|---|---|---|---|---|
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | nicotinamide adenine dinucleotide (oxidized, NAD+) | 97.1 | 5.4 | 18 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), nicotinamide adenine dinucleotide (oxidized, NAD+) |
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | nicotinamide adenine dinucleotide phosphate (oxidized, NADP+)shikimate; cosubstrate shikimate | 5.3 | 0.0073 | 726 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), nicotinamide adenine dinucleotide phosphate (oxidized, NADP+) |
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | nicotinamide adenine dinucleotide phosphate (oxidized, NADP+)quinate; cosubstrate quinate | 0.077 | 0.0057 | 13.5 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), nicotinamide adenine dinucleotide phosphate (oxidized, NADP+) |
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | quinate | 0.16 | 6.1 | 0.026 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), quinate |
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | shikimateshikimate varied at fixed 2 mM NAD+; cosubstrate NAD+ | 31.2 | 0.351 | 88.9 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), shikimate |
| Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132) | Pseudomonas putida | shikimateshikimate varied at fixed 2 mM NADP+; cosubstrate NADP+ | 5.8 | 0.0046 | 1261 | pH 8.8, 22 °C | Open record: Ael1 (AroE-like 1 shikimate dehydrogenase homolog, P. putida homolog #132), shikimate |
| AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu) | Pseudomonas putida | nicotinamide adenine dinucleotide (oxidized, NAD+) | 6.72 | 5.43 | 1.24 | pH 8.8, 22 °C | Open record: AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu), nicotinamide adenine dinucleotide (oxidized, NAD+) |
| AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu) | Pseudomonas putida | nicotinamide adenine dinucleotide phosphate (oxidized, NADP+) | 261.5 | 0.112 | 2335 | pH 8.8, 22 °C | Open record: AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu), nicotinamide adenine dinucleotide phosphate (oxidized, NADP+) |
| AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu) | Pseudomonas putida | shikimateshikimate varied at fixed 2 mM NAD+; cosubstrate NAD+ | 1.99 | 0.0786 | 25.32 | pH 8.8, 22 °C | Open record: AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu), shikimate |
| AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu) | Pseudomonas putida | shikimateshikimate varied at fixed 2 mM NADP+; cosubstrate NADP+ | 266.2 | 0.105 | 2535 | pH 8.8, 22 °C | Open record: AroE (shikimate dehydrogenase, P. putida homolog #1, AroEPpu), shikimate |
| YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460) | Pseudomonas putida | nicotinamide adenine dinucleotide (oxidized, NAD+)shikimate; cosubstrate shikimate | 61.1 | 0.572 | 106.8 | pH 8.8, 22 °C | Open record: YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460), nicotinamide adenine dinucleotide (oxidized, NAD+) |
| YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460) | Pseudomonas putida | nicotinamide adenine dinucleotide (oxidized, NAD+)quinate; cosubstrate quinate | 40.7 | 1.083 | 37.6 | pH 8.8, 22 °C | Open record: YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460), nicotinamide adenine dinucleotide (oxidized, NAD+) |
| YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460) | Pseudomonas putida | quinate | 37.7 | 0.783 | 48.1 | pH 8.8, 22 °C | Open record: YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460), quinate |
| YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460) | Pseudomonas putida | shikimate | 55.7 | 4.2 | 13.9 | pH 8.8, 22 °C | Open record: YdiB (YdiB2Ppu shikimate/quinate dehydrogenase, P. putida homolog #460), shikimate |