Values CatLog read from this paper

Role of RecJ-like protein with 5'-3' exonuclease activity in oligo(deoxy)nucleotide degradation

PMID 21087930doi:10.1074/jbc.m110.161596Open in Browse

The paper itself is not on this site: read it at the publisher. This page lists only the values CatLog read from it.

CatLog read 28 records (83 values) from this paper: TTHA0118, Mpn140, cd-ttRecJ and 2 more from Thermus thermophilus, Mycoplasma pneumoniae, Bacillus subtilis.

Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units. Values are in CatLog's units; each record opens in Browse with the line the paper prints and the checks. CatLog calculated the 1 kcat/Km value marked “calc.” from kcat and Km; no printed kcat/Km was read for that record.

EC 3.1.3.7

Records read from this paper
Enzyme	Organism	Substrate	k_cat (s⁻¹)	K_m (mM)	k_cat/K_m (mM⁻¹ s⁻¹)	Conditions	Open record
cd-ttRecJ	Thermus thermophilus	5'-ATG-3' (3-mer single-stranded DNA)	0.0011	0.033	0.033	pH 7.5, 37 °C	Open record: cd-ttRecJ, 5'-ATG-3' (3-mer single-stranded DNA)
cd-ttRecJ	Thermus thermophilus	5'-ATGACA-3' (6-mer single-stranded DNA)	0.021	0.042	0.5	pH 7.5, 37 °C	Open record: cd-ttRecJ, 5'-ATGACA-3' (6-mer single-stranded DNA)
cd-ttRecJ	Thermus thermophilus	5'-ATGACAACTAA-3' (11-mer single-stranded DNA)	0.0071	0.023	0.31	pH 7.5, 37 °C	Open record: cd-ttRecJ, 5'-ATGACAACTAA-3' (11-mer single-stranded DNA)
cd-ttRecJ	Thermus thermophilus	5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)	0.0073	0.02	0.37	pH 7.5, 37 °C	Open record: cd-ttRecJ, 5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)
Mpn140	Mycoplasma pneumoniae	3'-phosphoadenosine 5'-phosphate	0.75	0.032	23	pH 7.5, 37 °C	Open record: Mpn140, 3'-phosphoadenosine 5'-phosphate
Mpn140	Mycoplasma pneumoniae	5'-ATGACA-3' (6-mer single-stranded DNA)5 mM MgCl2	0.45	7.5 × 10⁻⁴	600	pH 7.5, 37 °C	Open record: Mpn140, 5'-ATGACA-3' (6-mer single-stranded DNA)
Mpn140	Mycoplasma pneumoniae	5'-ATGACA-3' (6-mer single-stranded DNA)5 mM MnCl2	0.012	0.0015	8	pH 7.5, 37 °C	Open record: Mpn140, 5'-ATGACA-3' (6-mer single-stranded DNA)
Mpn140	Mycoplasma pneumoniae	5'-ATGACAACTAA-3' (11-mer single-stranded DNA)	0.0028	0.0035	0.8	pH 7.5, 37 °C	Open record: Mpn140, 5'-ATGACAACTAA-3' (11-mer single-stranded DNA)
Mpn140	Mycoplasma pneumoniae	5'-AUGACA-3' (6-mer single-stranded RNA)5 mM MgCl2	0.033	3.2 × 10⁻⁴	100	pH 7.5, 37 °C	Open record: Mpn140, 5'-AUGACA-3' (6-mer single-stranded RNA)
Mpn140	Mycoplasma pneumoniae	5'-AUGACA-3' (6-mer single-stranded RNA)5 mM MnCl2	0.01	9.6 × 10⁻⁴	10	pH 7.5, 37 °C	Open record: Mpn140, 5'-AUGACA-3' (6-mer single-stranded RNA)
Mpn140	Mycoplasma pneumoniae	5'-AUGACAACUAA-3' (11-mer single-stranded RNA)	0.0038	0.0029	1.3	pH 7.5, 37 °C	Open record: Mpn140, 5'-AUGACAACUAA-3' (11-mer single-stranded RNA)
NrnA	Bacillus subtilis	5'-ATG-3' (3-mer single-stranded DNA)	490	0.28	1.8 × 10³	pH 7.5, 37 °C	Open record: NrnA, 5'-ATG-3' (3-mer single-stranded DNA)
TTHA0118	Thermus thermophilus	3'-phosphoadenosine 5'-phosphate	95	0.018	5.3 × 10³	pH 7.5, 37 °C	Open record: TTHA0118, 3'-phosphoadenosine 5'-phosphate
TTHA0118	Thermus thermophilus	5'-ATG-3' (3-mer single-stranded DNA)	200	0.065	3.1 × 10³	pH 7.5, 37 °C	Open record: TTHA0118, 5'-ATG-3' (3-mer single-stranded DNA)
TTHA0118	Thermus thermophilus	5'-ATGACA-3' (6-mer single-stranded DNA)	6.3	0.12	53	pH 7.5, 37 °C	Open record: TTHA0118, 5'-ATGACA-3' (6-mer single-stranded DNA)
TTHA0118	Thermus thermophilus	5'-ATGACAACTAA-3' (11-mer single-stranded DNA)	0.025	0.068	0.37	pH 7.5, 37 °C	Open record: TTHA0118, 5'-ATGACAACTAA-3' (11-mer single-stranded DNA)
TTHA0118	Thermus thermophilus	5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)	0.0047	0.078	0.06	pH 7.5, 37 °C	Open record: TTHA0118, 5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)
TTHA0118	Thermus thermophilus	5'-AUG-3' (3-mer single-stranded RNA)	280	0.28	1 × 10³	pH 7.5, 37 °C	Open record: TTHA0118, 5'-AUG-3' (3-mer single-stranded RNA)
TTHA0118	Thermus thermophilus	5'-AUGACA-3' (6-mer single-stranded RNA)	6.2	0.27	23	pH 7.5, 37 °C	Open record: TTHA0118, 5'-AUGACA-3' (6-mer single-stranded RNA)
TTHA0118	Thermus thermophilus	5'-AUGACAACUAA-3' (11-mer single-stranded RNA)	2.5	0.45	5.6	pH 7.5, 37 °C	Open record: TTHA0118, 5'-AUGACAACUAA-3' (11-mer single-stranded RNA)
TTHA0118	Thermus thermophilus	5'-AUGACAACUAAAGCAACACCC-3' (21-mer single-stranded RNA)	0.097	0.47	0.21	pH 7.5, 37 °C	Open record: TTHA0118, 5'-AUGACAACUAAAGCAACACCC-3' (21-mer single-stranded RNA)
TTHA0118	Thermus thermophilus	cAMP	0.0035	1.4	0.0025	pH 7.5, 37 °C	Open record: TTHA0118, cAMP
TTHA0118	Thermus thermophilus	cyclic GMP	0.017	2.4	0.0071	pH 7.5, 37 °C	Open record: TTHA0118, cyclic GMP
TTHA0118	Thermus thermophilus	double-stranded DNA with a 5'-end 6-mer single-stranded overhang (33f annealed to 27r)	0.0052	0.12	0.043	pH 7.5, 37 °C	Open record: TTHA0118, double-stranded DNA with a 5'-end 6-mer single-stranded overhang (33f annealed to 27r)
TTHA0118variant D114A	Thermus thermophilus	5'-ATGACA-3' (6-mer single-stranded DNA, 6f)	0.1	0.42	0.24 calc.	pH 7.5, 37 °C	Open record: TTHA0118 variant D114A, 5'-ATGACA-3' (6-mer single-stranded DNA, 6f)
ttRecJ	Thermus thermophilus	5'-ATGACA-3' (6-mer single-stranded DNA)	0.02	1.7 × 10⁻⁴	120	pH 7.5, 37 °C	Open record: ttRecJ, 5'-ATGACA-3' (6-mer single-stranded DNA)
ttRecJ	Thermus thermophilus	5'-ATGACAACTAA-3' (11-mer single-stranded DNA)	0.012	8.4 × 10⁻⁵	140	pH 7.5, 37 °C	Open record: ttRecJ, 5'-ATGACAACTAA-3' (11-mer single-stranded DNA)
ttRecJ	Thermus thermophilus	5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)	0.0047	3.7 × 10⁻⁵	130	pH 7.5, 37 °C	Open record: ttRecJ, 5'-ATGACAACTAAAGCAACACCC-3' (21-mer single-stranded DNA)