EC 3.1.3.89: 5'-deoxynucleotidase

HydrolasesOpen in Browse

CatLog read 25 records for EC 3.1.3.89 from 4 papers, for 3 organisms. Names in these papers: 5'-deoxyribonucleotidase YfbR, ecto-5'-nucleotidase CD73 (soluble form sCD73), YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase).

Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units.

CatLog also holds 2 records for EC 3.1.3.89 that are not yet re-read: from its earlier version, built from the enzyme databases and partly checked against the papers. All records for EC 3.1.3.89 in Browse.

Papers

Papers with records for EC 3.1.3.89
Paper	Organisms	Records
General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG	Escherichia coli	8
Crystal structure of a soluble form of human CD73 with ecto-5'-nucleotidase activity	Homo sapiens	8
Structural and biochemical characterization of the yeast HD domain containing protein YGK1 reveals a metal-dependent nucleoside 5'-monophosphatase	Saccharomyces cerevisiae	5
Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli	Escherichia coli	4

Records

Records for EC 3.1.3.89 read from the paper
Enzyme	Organism	Substrate	k_cat (s⁻¹)	K_m (mM)	k_cat/K_m (mM⁻¹ s⁻¹)	Conditions	Paper	Open record
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxyadenosine 5'-monophosphate	0.3	0.012	25.6	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxyadenosine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxyadenosine 5'-monophosphatewith 10 µM ATP (competitive inhibitor)	—	0.56	—	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxyadenosine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxycytidine 5'-monophosphate	0.23	0.036	6.42	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxycytidine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxyguanosine 5'-monophosphate	0.2	0.047	4.22	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxyguanosine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxyinosine 5'-monophosphate	0.24	0.017	14.1	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxyinosine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	2'-deoxyuridine 5'-monophosphate	0.23	0.02	11.6	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, 2'-deoxyuridine 5'-monophosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	p-nitrophenyl phosphate	0.56	2.09	0.27	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, p-nitrophenyl phosphate
5'-deoxyribonucleotidase YfbR	Escherichia coli	thymidine 5'-monophosphate	0.16	0.008	21.3	pH 8, 37 °C	PMID 15489502	Open record: 5'-deoxyribonucleotidase YfbR, thymidine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	2'-deoxyadenosine 5'-monophosphate	174	0.114	1.5 × 10³	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), 2'-deoxyadenosine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	adenosine 5'-monophosphate	187	0.0038	4.88 × 10⁴	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), adenosine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	beta-nicotinamide mononucleotide	102	0.88	120	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), beta-nicotinamide mononucleotide
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	cytidine 5'-monophosphate	202	0.0564	3.6 × 10³	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), cytidine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	guanosine 5'-monophosphate	132	0.0065	2.03 × 10⁴	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), guanosine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	inosine 5'-monophosphate	104	0.0071	1.47 × 10⁴	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), inosine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	thymidine 5'-monophosphate	40	0.008	5 × 10³	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), thymidine 5'-monophosphate
ecto-5'-nucleotidase CD73 (soluble form sCD73)	Homo sapiens	uridine 5'-monophosphate	289	0.0316	9.1 × 10³	37 °C	PMID 22997138	Open record: ecto-5'-nucleotidase CD73 (soluble form sCD73), uridine 5'-monophosphate
YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)	Escherichia coli	2'-deoxyadenosine 5'-monophosphate	0.14	0.017	8.09	pH 8	PMID 18353368	Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase), 2'-deoxyadenosine 5'-monophosphate
YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant E122A	Escherichia coli	2'-deoxyadenosine 5'-monophosphate	0.06	0.034	1.72	pH 8	PMID 18353368	Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant E122A, 2'-deoxyadenosine 5'-monophosphate
YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant V30A	Escherichia coli	2'-deoxyadenosine 5'-monophosphate	0.08	0.042	1.98	pH 8	PMID 18353368	Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant V30A, 2'-deoxyadenosine 5'-monophosphate
YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant V37A	Escherichia coli	2'-deoxyadenosine 5'-monophosphate	0.13	0.016	8.41	pH 8	PMID 18353368	Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant V37A, 2'-deoxyadenosine 5'-monophosphate
YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W)	Saccharomyces cerevisiae	2'-deoxyadenosine 5'-monophosphate	1	0.32	3.12	pH 8, 30 °C	PMID 29752939	Open record: YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), 2'-deoxyadenosine 5'-monophosphate
YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W)	Saccharomyces cerevisiae	2'-deoxycytidine 5'-monophosphate	0.28	0.36	0.78	pH 8, 30 °C	PMID 29752939	Open record: YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), 2'-deoxycytidine 5'-monophosphate
YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W)	Saccharomyces cerevisiae	2'-deoxyguanosine 5'-monophosphate	1.2	0.18	6.67	pH 8, 30 °C	PMID 29752939	Open record: YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), 2'-deoxyguanosine 5'-monophosphate
YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W)	Saccharomyces cerevisiae	p-nitrophenyl phosphate	3.48	5.44	0.64	pH 8, 30 °C	PMID 29752939	Open record: YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), p-nitrophenyl phosphate
YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W)	Saccharomyces cerevisiae	thymidine 5'-monophosphate (2'-deoxy)	1.1	0.23	4.78	pH 8, 30 °C	PMID 29752939	Open record: YGK1 (HD-domain nucleoside 5'-monophosphatase, YGL101W), thymidine 5'-monophosphate (2'-deoxy)