Values CatLog read from this paper
Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli
PMID 18353368doi:10.1016/j.jmb.2008.02.036Open in Browse
The paper itself is not on this site: read it at the publisher. This page lists only the values CatLog read from it.
CatLog read 11 records (33 values) from this paper: YfdR (HD-domain 5'-nucleotidase), YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) from Escherichia coli.
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units. Values are in CatLog's units; each record opens in Browse with the line the paper prints and the checks.
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Open record |
|---|---|---|---|---|---|---|---|
| YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) | Escherichia coli | 2'-deoxyadenosine 5'-monophosphate | 0.14 | 0.017 | 8.09 | pH 8 | Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase), 2'-deoxyadenosine 5'-monophosphate |
| YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant E122A | Escherichia coli | 2'-deoxyadenosine 5'-monophosphate | 0.06 | 0.034 | 1.72 | pH 8 | Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant E122A, 2'-deoxyadenosine 5'-monophosphate |
| YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant V30A | Escherichia coli | 2'-deoxyadenosine 5'-monophosphate | 0.08 | 0.042 | 1.98 | pH 8 | Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant V30A, 2'-deoxyadenosine 5'-monophosphate |
| YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase)variant V37A | Escherichia coli | 2'-deoxyadenosine 5'-monophosphate | 0.13 | 0.016 | 8.41 | pH 8 | Open record: YfbR (5'-deoxyribonucleotidase, HD-domain phosphohydrolase) variant V37A, 2'-deoxyadenosine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | 2'-deoxyadenosine 5'-monophosphate | 2.28 | 0.1189 | 19 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), 2'-deoxyadenosine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | 2'-deoxycytidine 5'-monophosphate | 0.84 | 0.0785 | 10.6 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), 2'-deoxycytidine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | 2'-deoxyguanosine 5'-monophosphate | 1.6 | 0.0647 | 24.6 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), 2'-deoxyguanosine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | 2'-deoxyinosine 5'-monophosphate | 0.61 | 0.0475 | 12.7 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), 2'-deoxyinosine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | 2'-deoxyuridine 5'-monophosphate | 1.36 | 0.3105 | 4.4 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), 2'-deoxyuridine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | guanosine 5'-monophosphate | 0.69 | 0.3798 | 0.182 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), guanosine 5'-monophosphate |
| YfdR (HD-domain 5'-nucleotidase) | Escherichia coli | thymidine 5'-monophosphate | 1.19 | 0.1294 | 9.2 | pH 7.5, 37 °C | Open record: YfdR (HD-domain 5'-nucleotidase), thymidine 5'-monophosphate |