EC 5.1.1.5: lysine racemase
IsomerasesOpen in Browse
CatLog read 33 records for EC 5.1.1.5 from 4 papers, for 3 organisms. Names in these papers: lysine racemase (Lyr), lysine racemase (OEOE0162), Lys racemase (TM1597).
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units.
CatLog also holds 17 records for EC 5.1.1.5 that are not yet re-read: from its earlier version, built from the enzyme databases and partly checked against the papers. All records for EC 5.1.1.5 in Browse.
Papers
| Paper | Organisms | Records |
|---|---|---|
| doi:10.1016/j.procbio.2011.06.019 | Proteus mirabilis | 11 |
| Lysine racemase from a lactic acid bacterium, Oenococcus oeni: structural basis of substrate specificity | Oenococcus oeni | 10 |
| Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants | Proteus mirabilis | 6 |
| Elucidation of the d-lysine biosynthetic pathway in the hyperthermophile Thermotoga maritima | Thermotoga maritima | 6 |
Records
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Paper | Open record |
|---|---|---|---|---|---|---|---|---|
| Lys racemase (TM1597) | Thermotoga maritima | D-alanine | 725 | 282 | 2.575 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), D-alanine |
| Lys racemase (TM1597) | Thermotoga maritima | D-lysine | 669 | 1.77 | 380 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), D-lysine |
| Lys racemase (TM1597) | Thermotoga maritima | D-ornithine | 447 | 1.01 | 446 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), D-ornithine |
| Lys racemase (TM1597) | Thermotoga maritima | L-alanine | 965 | 375 | 2.576 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), L-alanine |
| Lys racemase (TM1597) | Thermotoga maritima | L-lysine | 693 | 2.14 | 325 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), L-lysine |
| Lys racemase (TM1597) | Thermotoga maritima | L-ornithine | 537 | 1.13 | 478 | pH 9, 90 °C | PMID 30548096 | Open record: Lys racemase (TM1597), L-ornithine |
| lysine racemase (Lyr) | Proteus mirabilis | D-lysine | 41.28 | 15 | 2.8 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr), D-lysine |
| lysine racemase (Lyr) | Proteus mirabilis | L-arginine | 10.83 | 14.9 | 0.727 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr), L-arginine |
| lysine racemase (Lyr) | Proteus mirabilis | L-arginine | 10.83 | 14.9 | 0.727 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr), L-arginine |
| lysine racemase (Lyr) | Proteus mirabilis | L-lysine | 55.43 | 21.8 | 2.54 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr), L-lysine |
| lysine racemase (Lyr) | Proteus mirabilis | L-lysine | 55.43 | 21.8 | 2.54 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr), L-lysine |
| lysine racemase (Lyr)variant S394C | Proteus mirabilis | L-arginine | 16.2 | 12.5 | 1.30 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394C, L-arginine |
| lysine racemase (Lyr)variant S394C | Proteus mirabilis | L-lysine | 50.68 | 26 | 1.9 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394C, L-lysine |
| lysine racemase (Lyr)variant S394N | Proteus mirabilis | L-arginine | 18.75 | 17.1 | 1.10 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394N, L-arginine |
| lysine racemase (Lyr)variant S394N | Proteus mirabilis | L-lysine | 31.25 | 26 | 1.2 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394N, L-lysine |
| lysine racemase (Lyr)variant S394T | Proteus mirabilis | L-arginine | 17.45 | 17 | 1.0 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394T, L-arginine |
| lysine racemase (Lyr)variant S394T | Proteus mirabilis | L-lysine | 62.5 | 25.2 | 2.48 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394T, L-lysine |
| lysine racemase (Lyr)variant S394Y | Proteus mirabilis | L-arginine | 19.67 | 17.8 | 1.10 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394Y, L-arginine |
| lysine racemase (Lyr)variant S394Y | Proteus mirabilis | L-lysine | 14.93 | 26.5 | 0.564 calc. | pH 9, 50 °C | doi:10.1016/j.procbio.2011.06.019 | Open record: lysine racemase (Lyr) variant S394Y, L-lysine |
| lysine racemase (Lyr)variant T391Y | Proteus mirabilis | L-arginine | 10.17 | 47.7 | 0.213 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr) variant T391Y, L-arginine |
| lysine racemase (Lyr)variant T391Y | Proteus mirabilis | L-lysine | 23.07 | 37.6 | 0.613 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr) variant T391Y, L-lysine |
| lysine racemase (Lyr)variant T391Y/S394Y | Proteus mirabilis | L-arginine | 0.38 | 75.5 | 0.0051 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr) variant T391Y/S394Y, L-arginine |
| lysine racemase (Lyr)variant T391Y/S394Y | Proteus mirabilis | L-lysine | 2.57 | 34.3 | 0.0748 calc. | pH 9, 50 °C | PMID 23118975 | Open record: lysine racemase (Lyr) variant T391Y/S394Y, L-lysine |
| lysine racemase (OEOE0162) | Oenococcus oeni | D-lysine | 2.8 | 9.8 | 0.28 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162), D-lysine |
| lysine racemase (OEOE0162) | Oenococcus oeni | D-ornithine | 1.8 | 22 | 0.083 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162), D-ornithine |
| lysine racemase (OEOE0162) | Oenococcus oeni | L-lysine | 3.5 | 11 | 0.32 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162), L-lysine |
| lysine racemase (OEOE0162) | Oenococcus oeni | L-ornithine | 1.8 | 27 | 0.068 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162), L-ornithine |
| lysine racemase (OEOE0162)variant T224I | Oenococcus oeni | D-lysine | 0.28 | 12 | 0.023 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant T224I, D-lysine |
| lysine racemase (OEOE0162)variant T224I | Oenococcus oeni | L-lysine | 0.32 | 15 | 0.025 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant T224I, L-lysine |
| lysine racemase (OEOE0162)variant T224I/W355Y | Oenococcus oeni | D-lysine | 0.148 | 31 | 0.0048 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant T224I/W355Y, D-lysine |
| lysine racemase (OEOE0162)variant T224I/W355Y | Oenococcus oeni | L-lysine | 0.162 | 27 | 0.006 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant T224I/W355Y, L-lysine |
| lysine racemase (OEOE0162)variant W355Y | Oenococcus oeni | D-lysine | 0.88 | 21 | 0.042 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant W355Y, D-lysine |
| lysine racemase (OEOE0162)variant W355Y | Oenococcus oeni | L-lysine | 1.03 | 23 | 0.045 | pH 8, 30 °C | PMID 23035128 | Open record: lysine racemase (OEOE0162) variant W355Y, L-lysine |