Values CatLog read from this paper
Distinctive features of the two classes of eukaryotic peptide deformylases
PMID 11733990doi:10.1006/jmbi.2001.5175Open in Browse
The paper itself is not on this site: read it at the publisher. This page lists only the values CatLog read from it.
CatLog read 30 records (63 values) from this paper: peptide deformylase 1A (AtPDF1A), peptide deformylase 1B (AtPDF1B), peptide deformylase 1A (LePDF1A) and 1 more from Arabidopsis thaliana, Lycopersicon esculentum.
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units. Values are in CatLog's units; each record opens in Browse with the line the paper prints and the checks. CatLog calculated the 25 kcat/Km values marked “calc.” from kcat and Km; no printed kcat/Km was read for those records.
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Open record |
|---|---|---|---|---|---|---|---|
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanine | 33 | 0.7 | 47 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-alanine |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanine methyl ester | 29 | 1.5 | 19 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-alanine methyl ester |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanyl-L-serine | 22 | 0.25 | 88 | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-alanyl-L-serine |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-leucine 4-nitroanilide | 0.21 | 0.19 | 1.1 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-leucine 4-nitroanilide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-leucyl-L-glutamic acid | 1.1 | 8 | 0.14 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-leucyl-L-glutamic acid |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-leucyl-L-phenylalanine | 0.7 | 0.23 | 3.0 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-leucyl-L-phenylalanine |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-methionyl-L-seryl-L-asparaginyl-L-glutamic acid | 11 | 4.1 | 2.7 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-methionyl-L-seryl-L-asparaginyl-L-glutamic acid |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucinamide | 0.9 | 13 | 0.069 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucinamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucine N-methylamide | 0.6 | 4.3 | 0.14 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucine N-methylamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-alanyl-L-serine | 26 | 0.6 | 43 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucyl-L-alanyl-L-serine |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-argininamide | 5 | 0.42 | 12 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucyl-L-argininamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-aspartic acid alpha-amide | 0.4 | 0.74 | 0.54 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucyl-L-aspartic acid alpha-amide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-leucinamide | 0.36 | 0.79 | 0.46 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucyl-L-leucinamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-serinamide | 10 | 0.42 | 24 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucyl-L-serinamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norleucylglycinamide | 1.4 | 2.9 | 0.48 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norleucylglycinamide |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-norvalyl-L-alanyl-L-serine | 18 | 9.4 | 1.9 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-norvalyl-L-alanyl-L-serine |
| peptide deformylase 1A (AtPDF1A) | Arabidopsis thaliana | N-formyl-L-phenylalanyl-L-alanyl-L-serine | 0.6 | 3 | 0.20 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1A (AtPDF1A), N-formyl-L-phenylalanyl-L-alanyl-L-serine |
| peptide deformylase 1A (LePDF1A) | Lycopersicon esculentum | N-formyl-L-methionyl-L-alanyl-L-serine | 15 | 0.27 | 54 | pH 7.5, 37 °C | Open record: peptide deformylase 1A (LePDF1A), N-formyl-L-methionyl-L-alanyl-L-serine |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanine | 15 | 4.3 | 3.5 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-alanine |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanine methyl ester | 259 | 6.9 | 38 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-alanine methyl ester |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanyl-L-serineTCEP (Fe form) | 13 | 8.2 | 1.6 | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-alanyl-L-serine |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-alanyl-L-serine5 mM NiCl2 (Ni form) | 75 | 5.6 | 13.3 | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-alanyl-L-serine |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-leucyl-L-glutamic acid | 9.2 | 12 | 0.77 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-leucyl-L-glutamic acid |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-methionyl-L-seryl-L-asparaginyl-L-glutamic acid | 1.9 | 2 | 0.95 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-methionyl-L-seryl-L-asparaginyl-L-glutamic acid |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-alanyl-L-serine | 136 | 11 | 12 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-norleucyl-L-alanyl-L-serine |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-argininamide | 138 | 0.5 | 280 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-norleucyl-L-argininamide |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-aspartic acid alpha-amide | 6.4 | 1 | 6.4 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-norleucyl-L-aspartic acid alpha-amide |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-norleucyl-L-serinamide | 51 | 1 | 51 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-norleucyl-L-serinamide |
| peptide deformylase 1B (AtPDF1B) | Arabidopsis thaliana | N-formyl-L-norleucylglycinamide | 13 | 4.3 | 3.0 calc. | pH 7.5, 37 °C | Open record: peptide deformylase 1B (AtPDF1B), N-formyl-L-norleucylglycinamide |
| peptide deformylase 1B (LePDF1B) | Lycopersicon esculentum | N-formyl-L-methionyl-L-alanyl-L-serine | — | — | 0.9 | pH 7.5, 37 °C | Open record: peptide deformylase 1B (LePDF1B), N-formyl-L-methionyl-L-alanyl-L-serine |