Values CatLog read from this paper
Phylogenetic diversity and the structural basis of substrate specificity in the beta/alpha-barrel fold basic amino acid decarboxylases
PMID 17626020doi:10.1074/jbc.m704066200Open in Browse
The paper itself is not on this site: read it at the publisher. This page lists only the values CatLog read from it.
CatLog read 26 records (76 values) from this paper: ornithine decarboxylase, lysine/ornithine decarboxylase (VvL/ODC), arginine decarboxylase and 1 more from Aquifex aeolicus, Vibrio vulnificus, Thermotoga maritima and 5 more.
Read from the paper by an AI model and checked against the paper by a second, separate AI run; code converted the units. Values are in CatLog's units; each record opens in Browse with the line the paper prints and the checks. CatLog calculated the 2 kcat/Km values marked “calc.” from kcat and Km; no printed kcat/Km was read for those records.
EC 4.1.1.17, EC 4.1.1.19, EC 4.1.1.20
| Enzyme | Organism | Substrate | kcat (s⁻¹) | Km (mM) | kcat/Km (mM⁻¹ s⁻¹) | Conditions | Open record |
|---|---|---|---|---|---|---|---|
| arginine decarboxylase | Vibrio vulnificus | L-arginine | 20 | 0.2 | 100 calc. | 37 °C | Open record: arginine decarboxylase, L-arginine |
| diaminopimelate decarboxylase | Vibrio vulnificus | meso-diaminopimelic acid | 5.9 | 2.5 | 2.4 calc. | 37 °C | Open record: diaminopimelate decarboxylase, meso-diaminopimelic acid |
| lysine/ornithine decarboxylase (VvL/ODC) | Vibrio vulnificus | L-lysine | 24 | 5.8 | 4.1 | pH 8, 37 °C | Open record: lysine/ornithine decarboxylase (VvL/ODC), L-lysine |
| lysine/ornithine decarboxylase (VvL/ODC) | Vibrio vulnificus | L-ornithine | 29 | 1.7 | 17 | pH 8, 37 °C | Open record: lysine/ornithine decarboxylase (VvL/ODC), L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-lysine | 0.05 | 15 | 0.0033 | pH 7, 63 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 1.2 | 6.7 | 0.18 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 43 | 60 | 0.72 | pH 7, 63 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 84 | 112 | 0.75 | pH 6, 80 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 98 | 141 | 0.7 | pH 7, 80 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 75 | 112 | 0.67 | pH 8.1, 80 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 61 | 91 | 0.68 | pH 9, 80 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Aquifex aeolicus | L-ornithine | 77 | 129 | 0.6 | pH 10, 80 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Bartonella henselae | L-lysine | 0.3 | 9 | 0.033 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Bartonella henselae | L-ornithine | 7.9 | 0.19 | 42 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Giardia lamblia | L-lysine | 0.93 | 6.4 | 0.15 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Giardia lamblia | L-ornithine | 8.6 | 0.19 | 45 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Methanosarcina mazei | L-lysine | 0.24 | 9.1 | 0.026 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Methanosarcina mazei | L-ornithine | 6.4 | 0.12 | 53 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Nitrosomonas europaea | L-lysine | 0.22 | 18 | 0.012 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Nitrosomonas europaea | L-ornithine | 3.5 | 2.3 | 1.5 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Pseudomonas aeruginosa | L-lysine | 0.21 | 8.5 | 0.025 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Pseudomonas aeruginosa | L-ornithine | 12 | 0.18 | 67 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Thermotoga maritima | L-lysine | 1.5 | 9.3 | 0.16 | pH 8.2, 63 °C | Open record: ornithine decarboxylase, L-lysine |
| ornithine decarboxylase | Thermotoga maritima | L-ornithine | 3.2 | 0.92 | 3.5 | pH 8, 37 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Thermotoga maritima | L-ornithine | 32 | 1.2 | 27 | pH 8.2, 63 °C | Open record: ornithine decarboxylase, L-ornithine |
| ornithine decarboxylase | Thermotoga maritima | L-ornithine | 95 | 2.4 | 40 | pH 7.9, 80 °C | Open record: ornithine decarboxylase, L-ornithine |